Publications 2017

Alberti A. et al.
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.
Scientific Data (2017) Aug. 4, e170093,
doi: 10.1038/sdata.2017.93

Galia W. et al.
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
BMC Genomics (2017) Aug. 18(1):574.
doi: 10.1186/s12864-017-3957-2

Dickson LB. et al.
Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector.
Sci Adv (2017) Aug. 3(8):e1700585.
doi: 10.1126/sciadv.1700585.

Hervé M. et al.
Translational identification of transcriptional signatures of major depression and antidepressant response.
Front. Mol. in Neuroscience. (2017) Aug. 10:248.
doi: 10.3389/fnmol.2017.00248

Galia W. et al.
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
BMC Genomics (2017) Aug.18(1):574.
doi: 10.1186/s12864-017-3957-2

Duarte M. et al.
Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation.
Environ Microbiol. (2017) Aug.19(8):2992-3011.
doi: 10.1111/1462-2920.13756

Sun S. et al.
Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination.
PLoS Biol. (2017) Aug. 15(8):e2002527.
doi: 10.1371/journal.pbio.2002527

ten Hoopen P. et al.
The metagenomic data life-cycle: standards and best practices.
GigaScience (2017) Aug. 6(8):1-11.
doi: 10.1093/gigascience/gix047

Blanchard L. et al.
Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria.
MicrobiologyOpen (2017) Aug. 6(4).
doi: 10.1002/mbo3.477

Pérez-Pascual D. et al.
The complete genome sequence of the fish pathogen Tenacibaculum maritimum provides insights into virulence mechanisms.
Front Microbiol. (2017) Aug. 8:1542.
doi: 10.3389/fmicb.2017.01542

Curtit E. et al.
Assessment of the prognostic role of a 94-single nucleotide polymorphisms risk score in early breast cancer in the SIGNAL/PHARE prospective cohort: no correlation with clinico-pathological characteristics and outcomes.
Breast Cancer Res. (2017) Aug. 19(1):98.
doi: 10.1186/s13058-017-0888-4

Genin E. et al.
The French Exome (FREX) Project: A Population-based panel of exomes to help filter out common local variants.
Genetic Epidemiology (2017) Aug. 41 (7): p. 691-691. The 2017 Annual Meeting of the International Genetic Epidemiology Society
doi: 10.1002/gepi.22062

Pierron D. et al.
Genomic landscape of human diversity across Madagascar.
Proc Natl Acad Sci U S A (2017) Aug. 114(32):E6498-E6506.
doi: 10.1073/pnas

Simandi Z. et al.
RXR heterodimers orchestrate transcriptional control of neurogenesis and cell fate specification.
Mol Cell Endocrinol. (2017) Aug. pii: S0303-7207(17)30413-6.
doi: 10.1016/j.mce.2017.07.033

Cabel L. et al.
Circulating tumor DNA changes for early monitoring of anti-PD1 immunotherapy: a proof-of-conceptstudy.
Ann Oncol. (2017) Aug. 28(8):1996-2001.
doi: 10.1093/annonc/mdx212

Morchikh M. et al.
HEXIM1 and NEAT1 long non-coding RNA form a multi-subunit complex that regulates DNA-mediated innate immune response.
Mol Cell. (2017) Aug. 67(3):387-399.e5.
doi: 10.1016/j.molcel.2017.06.020

Baratin M. et al.
T Cell zone resident macrophages silently dispose of apoptotic cells in the lymph node.
Immunity (2017) Aug. 47(2):349-362.e5.
doi: 10.1016/j.immuni.2017.07.019

Blanc-Mathieu R. et al.
Population genomics of picophytoplankton unveils novel chromosome hypervariability.
Sci Adv. (2017) Jul. 3(7): e1700239.
doi: 10.1126/sciadv.1700239

Bellenguez C. et al.
Contribution to Alzheimer's disease risk of rare variants in TREM2, SORL1, and ABCA7 in 1779 cases and 1273 controls.
Neurobiol. Aging (2017) Jul. pii: S0197-4580(17)30232-4.
doi: 10.1016/j.neurobiolaging.2017.07.001

Niewiadomska-Cimicka A. et al.
Genome-wide analysis of RARbeta transcriptional targets in Mouse striatum links retinoic acid signaling with Huntington's disease and other neurodegenerative disorders.
Mol Neurobiol. (2017) Jul. 54(5):3859-3878.
doi: 10.1007/s12035-016-0010-4

Perrin S. et al.
Aozan: an automated post-sequencing data-processing pipeline.
Bioinformatics (2017) Jul. 33(14):2212-2213.
doi: 10.1093/bioinformatics/btx154

Thierion E. et al.
Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements.
PLoS Genet. (2017) Jul. 13(7):e1006903.
doi: 10.1371/journal.pgen.1006903

Farasin J. et al
Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite.
Microb Biotechnol. (2017) Jul. 10(4):789-803.
doi: 10.1111/1751-7915.12556

Lupu-Plesu M. et al.
Effects of proton versus photon irradiation on (lymph)angiogenic, inflammatory, proliferative and anti-tumor immune responses in head and neck squamous cell carcinoma.
Oncogenesis (2017) Jul. 6(7):e354.
doi: 10.1038/oncsis.2017.56

Tsagmo Ngoune JM. et al.
Transcriptional profiling of Midguts prepared from Trypanosoma/T. congolense-positive Glossina palpalis palpalis collected from two distinct Cameroonian Foci: coordinated signatures of the Midguts' remodeling as T. congolense-supportive niches.
Frontiers in Immunology (2017) Jul. 8:876.
doi: 10.3389/fimmu.2017.00876

Gully D. et al.
Complete genome sequence of Bradyrhizobium sp. ORS285, a photosynthetic strain able to establish Nod Factor-Dependent or Nod Factor-Independent symbiosis with Aeschynomene Legumes.
Genome Announc. (2017) Jul. 5(30). pii: e00421-17.
doi: 10.1128/genomeA.00421-17

Pancrace C. et al.
Rearranged biosynthetic gene cluster and synthesis of hassallidin E in Planktothrix serta PCC 8927.
ACS Chem Biol. (2017) Jul. 12(7):1796-1804.
doi: 10.1021/acschembio

Nattier R. et al.
Phylogeny and diversification of the cloud forest Morpho sulkowskyi group (Lepidoptera, Nymphalidae) in the evolving Andes.
Zool Scr. (2017) Jul. 46(4):459-472.
doi: 10.1111/zsc.12226

Fariello MI. et al.
Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach.
Mol Ecol. (2017) Jul. 26(14):3700-3714.
doi: 10.1111/mec.14141

Mach N. et al.
The effects of weaning methods on gut microbiota composition and Horse physiology.
Front Physiol. (2017) Jul. 8:535.
doi: 10.3389/fphys.2017.00535