Publications 2016

Ailloud F. et al.
In planta comparative transcriptomics of host-adapted strains of Ralstonia solanacearum
Peer J. (2016) Jan 5.4:e1549
doi: 10.1186/s12864-015-1474-8

Popa A. et al.
Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells
BMC Genomics. (2016) Jan 14.17(1):52
doi: 10.1186/s12864-016-2384-0

Lavergne A. et al.
Identification of lymphocytic choriomeningitis mammarenavirus in house mouse (Mus musculus, Rodentia) in French Guiana
Infect Genet Evol. (2016) 37:225-30
doi: 10.1016/j.meegid.2015.11.023

Bisch G. et al.
Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species
Genome Biol Evol. (2016) 8(1):148-60
doi: 10.1093/gbe/evv248

St John EP. et al.
454 HIV-1 Alpha Study Group. A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and TropismTesting sing 454 Ultra Deep Pyrosequencing
PLoS One. (2016) 11(1):e0146687
doi: 10.1371/journal.pone.0146687

Merlevede J. et al.
Mutation allele burden remains unchanged in chronic myelomonocytic leukaemia responding to hypomethylating agents
Nat Commun. (2016) 7: 10767
doi: 10.1038/ncomms10767

Prasad MK. et al.
A targeted next-generation sequencing assay for the molecular diagnosis of genetic disorders with orodental involvement
J Med Genet. 2016 53(2):98-110
doi: 10.1136/jmedgenet-2015-103302

Sapriel G. et al.
Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications
BMC Genomics. (2016) 17:118
doi: 10.1186/s12864-016-2448-1

Laureau R. et al.
Extensive Recombination of a Yeast Diploid Hybrid through Meiotic Reversion
PLoS Genetics. (2016) 12(2):e1005781
doi: 10.1371/journal.pgen.1005781

Garot A. et al.
Sequential activation and distinct functions for distal and proximal modules within the IgH 3' regulatory region
Proc Natl Acad Sci U S A. (2016) pii: 201514090
doi: 10.1073/pnas.1514090113

Glaser P. et al.
Demography and Intercontinental Spread of the USA300 Community-Acquired Methicillin-Resistant Staphylococcus aureus Lineage
MBio. (2016) 7(1):e02183-15
doi: 10.1128/mBio.02183-15

Boutet G. et al.
SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population
BMC Genomics. (2016) 17:121
doi: 10.1186/s12864-016-2447-2

Bernut A. et al.
Insights into the smooth-to-rough transitioning in Mycobacterium bolletii unravels a functional Tyr residue conserved in all mycobacterial MmpL family members
Mol Microbiol. (2016) 99(5):866-83
doi: 10.1111/mmi.13283

Langer D. et al.
Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation
Nat Commun. (2016) 7: 11063
doi: 10.1038/ncomms11063

Acemel R.D. et al.
A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Nature Genetics. (2016) 48(3): p. 336-341
doi: 10.1038/ng.3497

Escudero JA. et al.
Unmasking the ancestral activity of integron integrases reveals a smooth evolutionary transition during functional innovation
Nat Commun. (2016) 7:10937
doi: 10.1038/ncomms10937

Gerbore J. et al.
Complete Genome Sequence of Bacillus methylotrophicus Strain B25, a Potential Plant Growth-Promoting Rhizobacterium
Genome Announc. (2016) 4(2)
doi:

Bronnec V. et al.
Draft Genome Sequence of Campylobacter jejuni Bf, an Atypical Strain Able To Grow under Aerobiosis
Genome Announc. (2016) Apr 7.4(2).
doi: 10.1128/genomeA.00058-16

Roquis D. et al.
Frequency and mitotic heritability of epimutations in Schistosoma mansoni
Mol Ecol. (2016) 25:1741-58
doi: 10.1111/mec.13555

Beghain J. et al.
Plasmodium copy number variation scan: gene copy numbers evaluation in haploid genomes
Malar J. (2016) 15:206
doi: 10.1186/s12936-016-1258-x

Plucain J. et al.
Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria
BMC Evol Biol. (2016) 16:86
doi: 10.1186/s12862-016-0662-8

Guidi, L. et al.
Plankton networks driving carbon export in the oligotrophic ocean
Nature. (2016) 532(7600): p. 465-470
doi: 10.1038/nature16942

Popova T. et al.
Ovarian Cancers Harboring Inactivating Mutations in CDK12 Display a Distinct Genomic Instability Pattern Characterized by Large Tandem Duplications
Cancer Res. (2016) 76(7):1882-91
doi: 10.1158/0008-5472.CAN-15-2128

Zhang SD. et al.
Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.
Extremophiles. (2016) 20(3):301-10
doi: 10.1007/s00792-016-0822-1

Lebrigand K. et al.
Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes
PLoS Genet. (2016) 12(5):e1006017
doi: 10.1371/journal.pgen.1006017

Lassalle S. et al.
MicroRNA-375/SEC23A as biomarkers of the in vitro efficacy of vandetanib
Oncotarget. (2016) 24.7(21):30461-78
doi: 10.18632/oncotarget.8458

Merhej J. et al.
A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata
Front Microbiol. (2016) 7:645
doi: 10.3389/fmicb.2016.00645

Bussard A. et al.
Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms
Environ Microbiol. (2016)
doi: 10.1111/1462-2920.13398

Popa A. et al.
RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing
F1000Res. (2016) 5:1309
doi: 10.12688/f1000research.8964

Nicolas G. et al.
CNR-MAJ collaborators. SORL1 rare variants: a major risk factor for familial early-onset Alzheimer's disease
Mol Psychiatry. (2016) 21(6):831-6
doi: 10.1038/mp.2015.121