Publications 2018

Villar E et al.
The Ocean Gene Atlas: exploring the biogeography of plankton genes online
Nucleic Acids Research 2018 46(W1)
doi: 10.1093/nar/gky376

Ziegler M et al.
Status of coral reefs of Upolu (Independent State of Samoa) in the South West Pacific and recommendations to promote resilience and recovery of coastal ecosystems
Marine Pollution Bulletin 2018 129(1)
doi: 10.1016/j.marpolbul.2018.02.044

Marlétaz F et al.
Amphioxus functional genomics and the origins of vertebrate gene regulation
Nature 2018 564(7734)
doi: 10.1038/s41586-018-0734-6

Marchet C et al.
De novo clustering of long reads by gene from transcriptomics data
Nucleic Acids Research 2018 47(1)
doi: 10.1093/nar/gky834

Peter J et al.
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
Nature 2018 556(7701)
doi: 10.1038/s41586-018-0030-5

Duployez N et al.
The stem cell-associated gene expression signature allows risk stratification in pediatric acute myeloid leukemia
Leukemia 2018 33(2)
doi: 10.1038/s41375-018-0227-5

Vandenbussche C et al.
Tacrolimus-induced nephrotoxicity in mice is associated with microRNA deregulation
Archives of Toxicology 2018 92(4)
doi: 10.1007/s00204-018-2158-3

Nguyen CN et al.
A root-knot nematode small glycine and cysteine-rich secreted effector, MiSGCR1, is involved in plant parasitism
New Phytologist 2017 217(2)
doi: 10.1111/nph.14837

Maurin aT et al.
HITS-CLIP in various brain areas reveals new targets and new modalities of RNA binding by fragile X mental retardation protein
Nucleic Acids Research 2018 46(12)
doi: 10.1093/nar/gky267

Giovannini-Chami L et al.
The “one airway, one disease” concept in light of Th2 inflammation
European Respiratory Journal 2018 52(4)
doi: 10.1183/13993003.00437-2018

Zarif H et al.
CD4$mathplus$ T Cells Have a Permissive Effect on Enriched Environment-Induced Hippocampus Synaptic Plasticity
Frontiers in Synaptic Neuroscience 2018 10
doi: 10.3389/fnsyn.2018.00014

Pruneau L et al.
Comparative Transcriptome Profiling of Virulent and Attenuated Ehrlichia ruminantium Strains Highlighted Strong Regulation of map1- and Metabolism Related Genes
Frontiers in Cellular and Infection Microbiology 2018 8
doi: 10.3389/fcimb.2018.00153

Castagnola S et al.
New Insights Into the Role of Cav2 Protein Family in Calcium Flux Deregulation in Fmr1-KO Neurons
Frontiers in Molecular Neuroscience 2018 11
doi: 10.3389/fnmol.2018.00342

Falk AT et al.
Effect of mutant variants of the KRAS gene on PD-L1 expression and on the immune microenvironment and association with clinical outcome in lung adenocarcinoma patients
Lung Cancer 2018 121
doi: 10.1016/j.lungcan.2018.05.009

Medina C et al.
Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita
BMC Genomics 2018 19(1)
doi: 10.1186/s12864-018-5296-3

Revinski DR et al.
CDC20B is required for deuterosome-mediated centriole production in multiciliated cells
Nature Communications 2018 9(1)
doi: 10.1038/s41467-018-06768-z

Alculumbre SG et al.
Diversification of human plasmacytoid predendritic cells in response to a single stimulus
Nature Immunology 2017 19(1)
doi: 10.1038/s41590-017-0012-z

Basse C et al.
Exploitation of Precision Medicine Trials Data: Examples of Long Responders From the SHIVA01 Trial
JCO Precision Oncology 2018 2
doi: 10.1200/PO.18.00048

Bitetti A et al.
MicroRNA degradation by a conserved target RNA regulates animal behavior
Nature Structural & Molecular Biology 2018 25(3)
doi: 10.1038/s41594-018-0032-x

Cacheux W et al.
Array comparative genomic hybridization identifies high level of PI3K/Akt/mTOR pathway alterations in anal cancer recurrences
Cancer Medicine 2018 7(7)
doi: 10.1002/cam4.1533

Campagne A et al.
The BAP1 deubiquitinase complex is a general transcriptional co-activator
Cold Spring Harbor Laboratory 2018
doi: 10.1101/244152

Chang KW et al.
Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development
BMC Genomics 2018 19(1)
doi: 10.1186/s12864-018-4820-9

Chicard M et al.
Whole-Exome Sequencing of Cell-Free DNA Reveals Temporo-spatial Heterogeneity and Identifies Treatment-Resistant Clones in Neuroblastoma
Clinical Cancer Research 2017 24(4)
doi: 10.1158/1078-0432.CCR-17-1586

Clément C et al.
High-resolution visualization of H3 variants during replication reveals their controlled recycling
Nature Communications 2018 9(1)
doi: 10.1038/s41467-018-05697-1

Costa A et al.
Fibroblast Heterogeneity and Immunosuppressive Environment in Human Breast Cancer
Cancer Cell 2018 33(3)
doi: 10.1016/j.ccell.2018.01.011

Courel M et al.
GC content shapes mRNA decay and storage in human cells
Cold Spring Harbor Laboratory 2018
doi: 10.1101/373498

Dubot C et al.
Comprehensive genomic profiling of head and neck squamous cell carcinoma reveals FGFR1 amplifications and tumour genomic alterations burden as prognostic biomarkers of survival
European Journal of Cancer 2018 91
doi: 10.1016/j.ejca.2017.12.016

El-Daher MT et al.
Tetratricopeptide repeat domain 7A is a nuclear factor that modulates transcription and chromatin structure
Cell Discovery 2018 4(1)
doi: 10.1038/s41421-018-0061-y

Furlan G et al.
The Ftx Noncoding Locus Controls X Chromosome Inactivation Independently of Its RNA Products
Mol Cell. 2018 70(3)
doi: 10.1016/j.molcel.2018.03.024

Greenberg M et al.
Dynamic enhancer partitioning instructs activation of a growth regulator during exit from naïve pluripotency
Cold Spring Harbor Laboratory 2018
doi: 10.1101/441824