Publications 2016

Helwi P. et al.
Vine nitrogen status and volatile thiols and their precursors from plot to transcriptome level
BMC Plant Biol . (2016) 16: 173
doi: 10.1186/s12870-016-0836-y

Bandiera S. et al.
HCV-induced up-regulation of miR-146a-5p in hepatocytes promotes viral infection and deregulates metabolic pathways associated with liver disease pathogenesis
J Virol (2016) 90(14):6387-400
doi: 10.1128/JVI.00619-16

Freyermuth F. et al.
Splicing misregulation of SCN5A contributes to cardiac-conduction delay and heart arrhythmia in myotonic dystrophy
Nat Commun. (2016) 7: 11067
doi: 10.1038/ncomms11067

Martianov I. et al.
TRF2 is recruited to the pre-initiation complex as a testis-specific subunit of TFIIA/ALF to promote haploid cell gene expression
Sci Rep. (2016) 6:32069
doi: 10.1038/srep32069

Malysheva V. et al.
Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis
Genome Med. (2016) May 19.8(1):57
doi: 10.1186/s13073-016-0310-3

Steed E. et al.
klf2a couples mechanotransduction and zebrafish valve morphogenesis through fibronectin synthesis
Nat Commun. (2016) 7:11646
doi: 10.1038/ncomms11646

Schaefer E. et al.
Identification of a novel mutation confirms the implication of IFT172 (BBS20) in Bardet-Biedl syndrome
J Hum Genet. (2016) 61(5):447-50
doi: 10.1038/jhg.2015.162

Santamaría Nuñez G.et al.
Lurbinectedin Specifically Triggers the Degradation of Phosphorylated RNA Polymerase II and the Formation of DNA Breaks in Cancer Cells
Mol Cancer Ther. (2016) 15(10):2399-2412
doi:

Guarani V. et al.
QIL1 mutation causes MICOS disassembly and early onset fatal mitochondrial encephalopathy with liver disease
Elife. (2016) 5. pii: e17163
doi: 10.7554

Renaud M. et al.
Expanding the spectrum of PEX10-related peroxisomal biogenesis disorders: slowly progressive recessive ataxia
J Neurol. (2016) 263(8):1552-8
doi: 10.1007/s00415-016-8167-3

Haas G. et al.
Identification of factors involved in target RNA-directed microRNA degradation
Nucleic Acids Res. (2016) 44(6):2873-87
doi: 10.1093/nar/gkw040

Hardies K. et al.
Loss of SYNJ1 dual phosphatase activity leads to early onset refractory seizures and progressive neurological decline
Brain. (2016) 139(Pt 9):2420-30
doi: 10.1093/brain/aww180

Demais V. et al.
Reversal of Pathologic Lipid Accumulation in NPC1-Deficient Neurons by Drug-Promoted Release of LAMP1-Coated Lamellar Inclusions
J Neurosci. (2016) 36: 8012-25
doi: 10.1523/JNEUROSCI.0900-16.2016

Tabet R. et al.
Fragile X Mental Retardation Protein (FMRP) controls diacylglycerol kinase activity in neurons
Proc Natl Acad Sci USA. (2016) 113(26):E3619-28
doi: 10.1073/pnas.1522631113

Holmes, A. et al.
Mechanistic signatures of HPV insertions in cervical carcinomas
Npj Genomic Medicine. (2016) 16004
doi: 10.1038/npjgenmed.2016.4

Jackson, R. et al.
Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology
BMC Genomics. (2016) Nov 2.17(1):851. Erratum in: BMC Genomics. 2016 Dec 12.17 (1):1018
doi:

Gallouet AS. et al.
Macrophage production and activation are dependent on TRIM33
Oncotarget. (2016) 8(3):5111-5122
doi: 10.18632/oncotarget.13872

Arrigoni, R. et al.
The complete mitochondrial genome of Acanthastrea maxima (Cnidaria, Scleractinia, Lobophylliidae)
Mitochondrial DNA. (2016) 27(2): p. 927-928
doi:

Aubriot, X. et al.
Molecular phylogenetics of Sarcolaenaceae (Malvales), Madagascar's largest endemic plant family
Botanical Journal of the Linnean Society. (2016) 182(4): p. 729-743
doi:

Boutte, J. et al.
Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)
Genome Biology and Evolution. (2016) 8(9): p. 3030-3044
doi:

Cornejo-Castillo, F.M. et al.
Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton
Nature Comm. (2016) 7: p. 11071
doi:

Falentin, H. et al.
Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20). Standards in Genomic
Sciences. (2016) 11
doi:

Farrant, G.K. et al.
Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria
Proc Nat Acad Sci U.S.A. (2016) 113(24): p. E3365-E3374
doi:

Flegontova, O. et al.
Extreme Diversity of Diplonemid Eukaryotes in the Ocean
Current Biology. (2016) 26(22): p. 3060-3065
doi:

Forster, D. et al.
Benthic protists: the under-charted majority
Fems Microbiology Ecology. (2016) 92(8)
doi:

Kole, C. et al.
Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells
PLoS One. (2016) 11(3): p. e0150758
doi:

Le Bescot, N. et al.
Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Environmental Microbiology. (2016) 18(2): p. 609-626
doi:

Le Provost, G. et al.
Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.)
Tree Physiology. (2016) 36(11): p. 1330-1342
doi:

Lescot, M. et al.
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Isme Journal. (2016) 10(5): p. 1134-1146
doi:

Madoui, M.A. et al.
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling (TM) Data
BMC Bioinformatics. (2016) 17: p. 115
doi: