Publications 2017

Robbe-Saule M. et al.
An optimized method for extracting bacterial RNA from Mouse skin tissue colonized by Mycobacterium ulcerans.
Front Microbiol. (2017) Mar. 8:512.
doi: 10.3389/fmicb.2017.00512

Ji B. et al.
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.
Environ Microbiol. (2017) Mar. 19(3):1103-1119.
doi: 10.1111/1462-2920.13637

Popovic A. et al.
Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families.
Sci Rep. (2017) Mar. 7:44103.
doi: 10.1038/srep44103

Galinier R. et al.
A multistrain approach to studying the mechanisms underlying compatibility in the interaction between Biomphalaria glabrata and Schistosoma mansoni.
PLoS Negl Trop Dis. (2017) Mar. 11(3):e0005398.
doi: 10.1371/journal.pntd.0005398

Mouammine A. et al.
An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence.
Sci Rep. (2017) Mar. 7:43670.
doi: 10.1038/srep43670

Medugorac I. et al.
Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks.
Nat. Gen. (2017) Mar.49(3):470-475.
doi: 10.1038/ng.3775

Oger PM.et al.
Complete genome sequence of the hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 isolated from the Rebecca's roost hydrothermal vent in the Guaymas basin.
Genome Announc. (2017) Feb. 5(7). pii: e01667-16.
doi: 10.1128/genomeA.01667-16

Villain A.et al.
Complete mitochondrial genome sequence of the freshwater diatom Asterionella Formosa.
Mitochondrial DNA Part B (2017) Feb . 2:1, 97-98.
doi: 10.1080/23802359.2017.1285210

Bourgeois YXC. et al.
A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird.
R Soc Open Sci. (2017) Feb. 4(2):160805.
doi: 10.1098/rsos.160805

Cabau C. et al.
Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies.
PeerJ. (2017) Feb. 5: e2988.
doi: 10.7717/peerj.2988

Arandel L. et al.
Immortalized human myotonic dystrophy muscle cell lines to assess therapeutic compounds.
Disease Models Mechanisms (2017) Feb. 10: 487-497.
doi: 10.1242/dmm.027367

Paban V. et al.
Omics analysis of mouse brain models of human diseases.
Gene (2017) Feb. 600:90-100.
doi: 10.1016/j.gene.2016.11.022

Bougneres P. et al.
Using spatio-temporal surveillance data to test the infectious environment of children before type 1 diabetes diagnosis.
PLoS One (2017) Feb 2. 12(2):e0170658.
doi: 10.1371/journal.pone.0170658

Bruel AL. et al.
Autosomal recessive truncating MAB21L1 mutation associated with a syndromic scrotal agenesis.
Clin Genet. (2017) Feb. 91(2):333-338.
doi: 10.1111/cge.12794

Pivot X. et al.
Constitutional variants are not associated with HER2-positive breast cancer: results from the SIGNAL/PHARE clinical cohort.
NPJ Breast Cancer (2017) Feb. 3:4.
doi: 10.1038/s41523-017-0005-y

Sefrioui D. et al.
Comparison of the quantification of KRAS mutations by digital PCR and E-ice-COLD-PCR in circulating-cell-free DNA from metastatic colorectal cancer patients.
Clin Chim Acta (2017) Feb. 465:1-4.
doi: 10.1016/j.cca.2016

Stoekle HC. et al.
Toward dynamic informed consent.
Med Sci. (Paris) (2017) Feb. 33(2):188-192.
doi: 10.1051/medsci/20173302015

Perez-Rico YA. et al.
Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes.
Genome Res. (2017) Feb. 27(2):259-268.
doi: 10.1101/gr.203679.115

Sahr T. et al.
The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system.
PLoS Genet. (2017) Feb. 13(2):e1006629.
doi: 10.1371/journal.pgen.1006629

Mazuet C. et al.
Characterization of Clostridium Baratii Type F strains responsible for an outbreak of botulism linked to beef meat consumption in France.
PLOS Currents Outbreaks (2017) Feb. Edition 1.
doi: 10.1371/currents.outbreaks.6ed2fe754b58a5c42d0c33d586ffc606

Thomas C. et al.
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species.
Genome Biology (2017) Feb. 18 (1): 27.
doi: 10.1186/s13059-016-1145-3

Meyer M. et al.
Impact of biotic and abiotic factors on the expression of fungal effector-encoding genes in axenic growth conditions.
Fungal Genet Biol. (2017) Feb. 99:1-12.
doi: 10.1016/j.fgb.2016.12.008

Castelin M. et al.
Untangling species identity in gastropods with polymorphic shells in the genus Bolma Risso, 1826 (Mollusca, Vetigastropoda).
Eur J Taxon (2017) Feb. 288:1-21.
doi: 10.5852/ejt.2017.288

Istace B. et al.
De novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Gigascience (2017) Feb. 6(2):1-13.
doi: 10.10 93/gigascience/giw018

Sierra B. et al.
OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans.
PLoS Pathog. (2017) Feb. 13(2):e1006220.
doi: 10.1371/journal.ppat.1006220

Witkowski B. et al.
A surrogate marker of piperaquine-resistant Plasmodium falciparum malaria: a phenotype-genotype association study.
Lancet Infect Dis. (2017) Feb. 17(2):174-183.
doi: 10.1016/S1473-3099(16)30415-7

Joshi S. et al.
TEAD transcription factors are required for normal primary myoblast differentiation in vitro and muscle regeneration in vivo.
PLoS Genet. (2017) Feb. 13(2):e1006600.
doi: 10.1371/journal.pgen.1006600

Le Gras S. et al.
Altered enhancer transcription underlies Huntington's disease striatal transcriptional signature.
Sci Rep. (2017) Feb. 7:42875.
doi: 10.1038/srep42875

Mazzitelli J-Y. et al.
De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam.
Ecotoxicology (2017) Jan. 26: 127–140.
doi: 10.1007/s10646-016-1748-1

Costantino F. et al.
A family-based genome-wide association study reveals an association of spondyloarthritis with MAPK14.
Ann Rheum Dis. (2017) Jan. 76(1):310-314.
doi: 10.1136/annrheumdis-2016-209449