Bioinformatics

Lang D et al.
The Physcomitrella patens
chromosome-scale assembly reveals moss genome structure and evolution
The Plant Journal 2018 93(3)
doi: 10.1111/tpj.13801

Claverie JM et al.
Mimiviridae: An Expanding Family of Highly Diverse Large dsDNA Viruses Infecting a Wide Phylogenetic Range of Aquatic Eukaryotes
Viruses 2018 10(9)
doi: 10.3390/v10090506

Varet H et al.
checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes
Bioinformatics 2018 35(5)
doi: 10.1093/bioinformatics/bty706

Dembélé D et al.
Analysis of high-throughput biological data using their rank values
Statistical Methods in Medical Research 2018
doi: 10.1177/0962280218764187

Royer G et al.
PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level
Microbial Genomics 2018 4(9)
doi: 10.1099/mgen.0.000211

Singh V et al.
Computational Systems Biology Approach for the Study of Rheumatoid Arthritis: From a Molecular Map to a Dynamical Model
Genomics and Computational Biology 2017 4(1)
doi: 10.18547/gcb.2018.vol4.iss1.e100050

Perron G et al.
A General Framework for Interrogation of mRNA Stability Programs Identifies RNA-Binding Proteins that Govern Cancer Transcriptomes
Cell Reports 2018 23(6)
doi: 10.1016/j.celrep.2018.04.031

Khan W et al.
MACARON: a python framework to identify and re-annotate multi-base affected codons in whole genome/exome sequence data
Bioinformatics 2018 34(19)
doi: 10.1093/bioinformatics/bty382

Deveau P et al.
QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction
Bioinformatics 2018 34(11)
doi: 10.1093/bioinformatics/bty016

Baudrin LG et al.
Molecular and Computational Methods for the Detection of Microsatellite Instability in Cancer
Frontiers in Oncology 2018 8
doi: 10.3389/fonc.2018.00621